miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000794
species: Gossypium hirsutum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGTAATTCATTCTAGCATTT

miRNA*
 ATGCTAGAATGACTTACATTG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTCTTATACTTCCTCCGTTTCACAATGTAATTCATTCTAGCATTTCCCACATTCATATAGTTGTTAATGAATCTGGACGTATTTATCTAGATTCATTAAC
AACTATGTGAATATGGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACGTTT

dot-bracket secondary structure
......((((((((((((((((((((((((.((((((((((((((.(((.(((((((((((((((((((((((((((........)))))))))))))))
)))))))))))).))).)))))))))))))).)))))))))))))))))))))))).....


SIMILARITIES
miRBase tae-MIR1132: 5e-41

PMRD tae-miR1132: 5e-41

microPC miR1132: 0.000000000002		UniProt no hits

RFAM MIR1122: 4e-45		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;