miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000796
species: Gossypium hirsutum
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGAGTTTCTCGAAGATGTCA

miRNA*
 ATATCTGGATGGACTTGCTT

mismatches: 3
bulges: 1
View larger
pre-miRNA
 AAGACTCTTGGGCGAGTTTCTCGAAGATGTCATTGATGAAACTGTTCATGATTCCCATAGCTTTGCTTGAGATACCGATATCTGGATGGACTTGCTTCAG
GACCT

dot-bracket secondary structure
.....((((((((((((((.((..(((((((....(((((....)))))(.(((....(((...))).))).)...))))))).)).)))))))).))))
))...


SIMILARITIES
miRBase no hits

PMRD osa-miRf10144-akr: 0.00002

microPC no hits		UniProt sp|Q1S9I9|H2B1_MEDTR: 0.000000000007

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;