miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST007969
species: Homo sapiens
miRNA family: mir-1236
source: miRNEST

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CCTCTTCCCCTTGTCTCTCCA

miRNA*
TGAGTGACAGGGGAAATGGGGA

mismatches: 3
bulges: 1

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pre-miRNA
CGCTGTGAGTGACAGGGGAAATGGGGATGGACTGGAAGTGGGCAGCATGGAGCTGACCTTCATCATGGCTTGGCCAACATAATGCCTCTTCCCCTTGTCT
CTCCAGCACTATCAG

dot-bracket secondary structure
.((((.(((.((((((((.((.(((.(((...(((....(((((((.....)))).)))...)))((((...)))).)))....))).)).)))))))).
)))))))........

SIMILARITIES

miRBase hsa-mir-1236: 4e-53

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

Identical with: ptr-mir-1236 from miRBase (MNEST030655)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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