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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000800
species: Gossypium hirsutum
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGTGGGCATACTGCCAACTG

miRNA*
 TTGGCATTCTGTCCACCTCC

mismatches: 3
bulges: 1
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pre-miRNA
 ATTTTTAGTTTGCTTTCATGGGGGTTTAGCAAAGGGCTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCCATCATGGAAAAAGTCCGTATTTTTCC
CCTCTGGTTTTTCATGGAGGTGGGCATACTGCCAACTGTGCTCTGTTGGCTTCTCTTTGTAAAATCCTTGTGATGCATTTCTTCCAG

dot-bracket secondary structure
......((..(((..((((((((((((.((((((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))
....)))........)))))))))))...)))))).)).))))))).))...)))))))).)))))))))))).)))...)).....


SIMILARITIES
miRBase ghr-MIR394a: 1e-91

PMRD ptc-miRf10096-akr: 7e-16

microPC miR394: 0.000009		UniProt no hits

RFAM MIR394: 0.0000000002		most similar mature miRNAs

Identical with: ghr-MIR394a from miRBase (MNEST041055)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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