ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2911
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCGGGGGACGGACTGGGAA miRNA* CCCAGTCCCGAACCCGTCGG mismatches: 5 bulges: 1 |
pre-miRNA
GGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGCCGGTGCACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGG
ACGGACTGGGAACGGCTCCCTCGGGGGCCTT
dot-bracket secondary structure
.....((((.(((((((((((((((....((((((((((((.((((..((((((..(((((....)))))..))))))..))))))).))))).))))..
..)))))))))......))))))...)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGCCGGTGCACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGG
ACGGACTGGGAACGGCTCCCTCGGGGGCCTT
dot-bracket secondary structure
.....((((.(((((((((((((((....((((((((((((.((((..((((((..(((((....)))))..))))))..))))))).))))).))))..
..)))))))))......))))))...)))).
SIMILARITIES| miRBase peu-MIR2911: 6e-37 PMRD peu-miR2911: 6e-37 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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