ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCTCCTCTTCCTCTTCCC miRNA* GAGGCGGGAAGAGGAGGACACG mismatches: 3 bulges: 1 |
pre-miRNA
ATAATACTGTATCTCCTCCTCTTCCTCTTCCCTCGCCGACGCCAGACGGCGGTCGGAGCTGCCGATGAGGCGCCGCAGTTGCAGGCTAAAACCGCGAGGC
GGAGGTCGGTATGGAGGCGGGAAGAGGAGGACACGTTGAGAAG
dot-bracket secondary structure
....((.(((...((((((((((((((((((...(((((((((...(((((((....)))))))....))).((((..((((.((......)))))).))
))..))))))..))))).))))))))))))).))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATAATACTGTATCTCCTCCTCTTCCTCTTCCCTCGCCGACGCCAGACGGCGGTCGGAGCTGCCGATGAGGCGCCGCAGTTGCAGGCTAAAACCGCGAGGC
GGAGGTCGGTATGGAGGCGGGAAGAGGAGGACACGTTGAGAAG
dot-bracket secondary structure
....((.(((...((((((((((((((((((...(((((((((...(((((((....)))))))....))).((((..((((.((......)))))).))
))..))))))..))))).))))))))))))).))).)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
