ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIRf772
source: miRNEST
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCTCTTTATGCTTCTGTCA miRNA* ACAGAAGATAGAGAGCACAG mismatches: 0 bulges: 1 |
pre-miRNA
TTTGTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCATC
ACCT
dot-bracket secondary structure
)....((.(((((((((((((((((((((((.(((((.(((((.(((((...))))).....))))).))).)).)))))))))))))).))))))))).)
)...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTGTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTGTCATC
ACCT
dot-bracket secondary structure
)....((.(((((((((((((((((((((((.(((((.(((((.(((((...))))).....))))).))).)).)))))))))))))).))))))))).)
)...
SIMILARITIES| miRBase gra-MIR157a: 1.0E-52 PMRD gra-miR157a: 1.0E-52 microPC miR157: 3.0E-47 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR157 from microPC (MNEST044919), gra-MIR157a from miRBase , miR157 from microPC , gra-miR157a from PMRD , miR156 from microPC , miR157 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
