miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000815
species: Gossypium raimondii
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTCCT

miRNA*
 CAGATGGTGGTGGTGGTTTGA

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TCTCCTTTACCTATTCATGGCTCATCATCATCATCATCTCCTTCTCCTCCTCCTTTAAGATCTGCCGCCGGTGGTGTTGGTGGTAATGGCGGCGTTGTTG
GTAGTGATAATGGTCATTATCGTCATACAAGGAGGGCAGCATCATCAGATGGTGGTGGTGGTTTGAAGAGGAGCAAGTCCACCG

dot-bracket secondary structure
.........(((.((((......((((((((((((((((........((((((((((.((..((((((((.((.(......).)).))))))))....((
((((((((....)))))))))))).)).))))))))..........)))))))))))))))).)))).))).............


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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