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Species belonging to selected taxon:
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST000816
species:
Gossypium raimondii
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Gossypium raimondii
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCGTCGTCATCATCATCA
miRNA*
ATGATGATGATGATGTGGGG
mismatches:
0
bulges:
1
View larger
pre-miRNA
ATTCTTCT
TCATCGTCGTCATCATCATCA
TCATCCATGGGTTGTTCTGCATCAAGACCCAACACTAATATCATCACCAAACCCCAGAATTCTTCACAGTC
TTCCACTTCTATAGAATCCATGGCCTCTTCCCACTCTTCCCCACCGCCCGTTTCTCGTGCTTTGTCTCTCCCGACGCCGCTTGTTCACCATCCGCCGTTG
AAAAAAGGCGACACCCACCACTTGGTTTCGTTAACATCCACTACTTATGGTTCCCTTTCACTCATCGACGTCCAAAAGCCTGTTATCGACGATACCCAAA
GTTTAGCCGACCAAGATTCGCCGGTTCATGGTGGTCAAACTGACTCGTTGTCACCTGACTCGGTTATCAACACTTGGGAACTCATGGATGGACTCGATG
A
TGATGATGATGATGTGGGG
CAT
dot-bracket secondary structure
......((
(((.(((((((((((((((((
((.((((((((((............))))))...((...................))..((((....(((.
....))).....))))(((((((....((((((.........((((...(((....(((...((((......)))).)))(((.(((((((..((((.((
((....(((..........(((((((.(((((((((.......(((.(((.((.............))...))).)))..))))...))))).)))..))
))...)))........)))).))))..))))))).)))..((((.....))))...))).))))..........)))))).)))))))))))...))))
)
)))))))))))))))))))
...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record