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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000816
species: Gossypium raimondii
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCGTCGTCATCATCATCA

miRNA*
ATGATGATGATGATGTGGGG

mismatches: 0
bulges: 1

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pre-miRNA
ATTCTTCTTCATCGTCGTCATCATCATCATCATCCATGGGTTGTTCTGCATCAAGACCCAACACTAATATCATCACCAAACCCCAGAATTCTTCACAGTC
TTCCACTTCTATAGAATCCATGGCCTCTTCCCACTCTTCCCCACCGCCCGTTTCTCGTGCTTTGTCTCTCCCGACGCCGCTTGTTCACCATCCGCCGTTG
AAAAAAGGCGACACCCACCACTTGGTTTCGTTAACATCCACTACTTATGGTTCCCTTTCACTCATCGACGTCCAAAAGCCTGTTATCGACGATACCCAAA
GTTTAGCCGACCAAGATTCGCCGGTTCATGGTGGTCAAACTGACTCGTTGTCACCTGACTCGGTTATCAACACTTGGGAACTCATGGATGGACTCGATGA
TGATGATGATGATGTGGGG
CAT


dot-bracket secondary structure
......(((((.(((((((((((((((((((.((((((((((............))))))...((...................))..((((....(((.
....))).....))))(((((((....((((((.........((((...(((....(((...((((......)))).)))(((.(((((((..((((.((
((....(((..........(((((((.(((((((((.......(((.(((.((.............))...))).)))..))))...))))).)))..))
))...)))........)))).))))..))))))).)))..((((.....))))...))).))))..........)))))).)))))))))))...)))))
)))))))))))))))))))
...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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