miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000827
species: Guizotia abyssinica
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Guizotia abyssinica Guizotia Millerieae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 ACGGCTTTCTTGAACTGCATG

mismatches: 1
bulges: 0
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pre-miRNA
 CTGCCATAAAAATGGTTCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCGGT
TCAATAAAGCTGTGGGAAGATAGAGACAGAATCAAAACCAGAAGA

dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((.(((....(((((...)))))(((((......))))).))).))))))
)))).)))))))))))).)))))))).)))))))...........


SIMILARITIES
miRBase aly-MIR396a: 0.00000000003

PMRD ath-miRf11010-akr: 0.000000000002

microPC miR396: 2e-30		UniProt no hits

RFAM MIR396: 0.0000000006		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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