miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000835
species: Helianthus argophyllus
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Helianthus argophyllus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTTCTCTTTCTGTCAGGG

mismatches: 0
bulges: 2
View larger
pre-miRNA
 TGGTTGAGAACTGACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT

dot-bracket secondary structure
.......((.(((((((((((((((((((((.(((......(((.....((((......))))...)))......))).)))))))).)))).)))))))
))..)).....


SIMILARITIES
miRBase osa-MIR156l: 0.000001

PMRD vvi-miR156b: 0.000001

microPC miR156: 6e-46		UniProt no hits

RFAM mir-156: 0.00002		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046709)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;