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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008464
species: Sorghum bicolor
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGTTCAAGG

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 3
bulges: 0
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pre-miRNA
 ATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTA
TGAGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATG

dot-bracket secondary structure
.((((((((((.((...((((.((((((..(((((((((.((((((((.....((((((((((.((....(((....)))...))...))))))))))..
)))))))).)))))))))..)))))).))))))))))))))))....


SIMILARITIES
miRBase sbi-MIR166a: 1e-56

PMRD sbi-miR166a: 1e-56

microPC miR166: 8e-55		UniProt no hits

RFAM mir-166: 3e-61		most similar mature miRNAs

Identical with: sbi-MIR166a from miRBase (MNEST042508)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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