miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008468
species: Sorghum bicolor
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCAAAAGATTCGTCTCGCG

miRNA*
 CGAGACGAAACTTTTGAGCCT

mismatches: 3
bulges: 0
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pre-miRNA
 TAATTTACGAGACGAAACTTTTGAGCCTAGTTAGTTCATGATTGGACAATATTTGTCAAATACAAACGAGATTGGGACTATTCACATTTTGCAAAAAAATT
TTGGAACTAAACAAGGCCTTTTTCCATCGAGTTTCCGTTTCTTGACGCCCGACTTCACTCTGTCCATGACTCTGTGTGCCAGGACACTTCCTGTTTTAGG
CCTTGTTTAGTTCCGAAAAGATTTCGGATTTCGGTACTGTAGCATTTTCGTTTGTTTGTGACAAATATTATCCAATTATGGACTAACTAGGATCAAAAGA
TTCGTCTCGCGATT

dot-bracket secondary structure
)...((.(((((((((.(((((((.(((((((((((((((((((((.(((((((((((...((((((((((.((..((...((...((((....)))).((
(((((((((((((((((((.....((..((((.(((..........((.......(((...(((...)))...))).))..))).))))..))....)))
)))))))))))))))))).((((...))))..))....))..)).))))))))))...))))))))))).))))))))))))))))))))).))))))).
))))))))).))..


SIMILARITIES
miRBase osa-MIR2124a: 2.0E-5

PMRD osa-miRf11301-akr: 3.0E-7

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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