miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008474
species: Sorghum bicolor
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTG

miRNA*
 GGCAGTCTCCTTGGCTAGC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 TGGCCGAGAGCAGGAGAAGAGGAGGGGCCGGCCTCGCATGGCGATGAGAGCACTGCTCTGGTAGCCAAGGATGACTTGCCTGTGGCCTCCACTCCACCTG
CGGCAGGAGGCTCTTCTTCTGCGCGCGCGTGTGTGTGTGGTTGTCGATCGCAGGCAGTCTCCTTGGCTAGCCTCAGCGGCTCTCATCCTTCATGCCAGGC
TCGTCTCTTCTTCAGTTTAATTTCATCAC

dot-bracket secondary structure
.....((((....(((..((((((((((.(((((.((((((.(((((((((...(((..((((((((((((.((((.((((((((...((((..(((.((
((((((((((....)))))))).)))).))).....)))).......)))))))))))))))))))))).))..))).)))))))))..)))))).))))
).))))))))))...)))..)))).....


SIMILARITIES
miRBase sbi-MIR169f: 3e-80

PMRD sbi-miR169f: 3e-80

microPC miR169: 2e-56		UniProt no hits

RFAM MIR169_5: 6e-79		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST044994)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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