ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
ACACACAACAGAGATGATAGAGTAGAGATTGAGAGATAGCAAGCCTTACATGGCAATAAGGTTGAGTTCTGGTAGCCAAGGATGACTTGCCTATATCCTCT
CTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCCTGACTCACTCTTATTTCTCATGCTAGGCTTGCATCTT
ATTTGGAGGTCATTTCACATATTTTTATGA
dot-bracket secondary structure
).........((((((((........((.(((((....((((((((..(((((.(((((((.((((((..((((((((((((.((((.((((((((((...
(((.(((.((((......))))..))).))).))....)))))))))))))))))))))).)).)))))).)))))))..)))))..)))))))).))))
).))....)))))))).((((....)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACACACAACAGAGATGATAGAGTAGAGATTGAGAGATAGCAAGCCTTACATGGCAATAAGGTTGAGTTCTGGTAGCCAAGGATGACTTGCCTATATCCTCT
CTAAAGGATCAGCAAATATTGAGGCTTCTAGTGGTCTCATATGGGCAGTCTCCTTGGCTAGCCTGACTCACTCTTATTTCTCATGCTAGGCTTGCATCTT
ATTTGGAGGTCATTTCACATATTTTTATGA
dot-bracket secondary structure
).........((((((((........((.(((((....((((((((..(((((.(((((((.((((((..((((((((((((.((((.((((((((((...
(((.(((.((((......))))..))).))).))....)))))))))))))))))))))).)).)))))).)))))))..)))))..)))))))).))))
).))....)))))))).((((....)))).
SIMILARITIES| miRBase sbi-MIR169m: 8.0E-47 PMRD sbi-miR169m: 8.0E-47 microPC miR169: 5.0E-45 | UniProt no hits RFAM 5MIR169_5: 5.0E-67 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST044953), sbi-MIR169m from miRBase , sbi-miR169m from PMRD , miR169 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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