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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008476
species: Sorghum bicolor
miRNA family: miR169j
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAGTCTCCTTGGCTAGCCT

miRNA*
GATAGCCAAGGATGACTTGCCTG

mismatches: 4
bulges: 2

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pre-miRNA
CCTTACTTGTCGATAAGGGCCTGCCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGT
TCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCCCATATTGCCCATGCCAG


dot-bracket secondary structure
..........(((((.(((((...(((...((((((((((.((((.(((((((.(((((((..((((((.(((......))).))))))..))))).)).
.)))))))))))))))))))))....))).))))).)))))..........



SIMILARITIES
miRBase sbi-MIR169l: 5e-50

PMRD sbi-miR169l: 5e-50

microPC miR169: 5e-47
UniProt no hits

RFAM MIR169_2: 2e-59
most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046508)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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