miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000848
species: Helianthus ciliaris
miRNA family: MIR2025
source: miRNEST

Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGTTCTCAGGTCGCCCCTGC

miRNA*
 AGGTGTGACATGAGAACACAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TTCACAATAACAAATGGCAGAGGAATCCAACAGGTGTGACATGAGAACACATGATATACTTAGATATTTTCACGTGTTCTCAGGTCGCCCCTGCTGAATT
TTCTTTGCTTCAACGTGTTGGT

dot-bracket secondary structure
....(((((......((((((((((..((.((((.(((((.(((((((((.(((.(((......)))..))).))))))))).))))).)))).))...)
)))))))))......)))))..


SIMILARITIES
miRBase mtr-MIR398c: 0.0000004

PMRD vvi-miR398c: 0.000006

microPC miR398: 8e-30		UniProt no hits

RFAM MIR398: 0.000000007		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045930)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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