ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: miR-4188
source: miRNEST
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAAATGCTATTTTTATATCA miRNA* ATGTAAGAGTCGCATGTTT mismatches: 2 bulges: 2 |
pre-miRNA
AATCTATTTGAACAAATGCTATTTTTATATCAATTGGAAGATTGCGAACAGCAATGGTGAAGAACACAAAACGATTTCATGGTGTCAACTCAACAGAGCA
AAACTGGATTCCCATCTTCAGCCAAAAATGACCACAGATTCATGTAAGAGTCGCATGTTTACTCAATA
dot-bracket secondary structure
........((((((..(((.((((((((((.((((((...(((((.....)))))((((((((.........((..((.((((.....(((....)))..
..)))))).))...)))))).))........)))...))).)))))))))).))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATCTATTTGAACAAATGCTATTTTTATATCAATTGGAAGATTGCGAACAGCAATGGTGAAGAACACAAAACGATTTCATGGTGTCAACTCAACAGAGCA
AAACTGGATTCCCATCTTCAGCCAAAAATGACCACAGATTCATGTAAGAGTCGCATGTTTACTCAATA
dot-bracket secondary structure
........((((((..(((.((((((((((.((((((...(((((.....)))))((((((((.........((..((.((((.....(((....)))..
..)))))).))...)))))).))........)))...))).)))))))))).))))))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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