miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000856
species: Helianthus exilis
miRNA family: MIR1533
source: miRNEST

Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATAATAATAATAATAATGATG

miRNA*
 TCATTATCTTTAATTTCTTATTT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 CCCAACATACCTACACTCATATGTATCATCATCTATAACCTCAACCAGATCATCATTATCTTTAATTTCTTATTTCACACAAACAAACTTTATGTAAAAA
CCAATCTAGGGTTTCAAACCGTTGCATACTGATTTGAAATTTTCGTAATTTATAAATTTCGAATCGTATATTAAACGAAACAAATAGTGATGATGAACGG
GGGAGGATTCCGGTCAGGTAATACGACGTCGTCTTCGGTGTGTAATATGAGCGAGATCTGGCGGTATCCGGTGAGTCATGGGAATGGCAATGCGGCGTCG
TTTGGCATGGGGGATAATAATAATAATAATGATGGTGGTGTGTTTATGGATGATGATCCGATGGTGGTGAGTAAGAAGCGGCG

dot-bracket secondary structure
.......(((.(((..((((..(.((((((((((((((...((((((..((((((((((..(((..((.(((((((...((..((.(((...(((..(((
((.......))))).....((((..((((.((((((((((((...........))))))))))))))))....))))..)))...)))..)).(((.(((
((.....))))).))).((...(((((((((((.((((..(((.....((......))..)))....)))).).(((((....)))))...)))))))))
)...)).)).))))))).)))))..)))))))))))))).)).)))))))))))))).).))))..))).)))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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