ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: miR-1638
source: miRNEST
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCGTTTGTTTTGTTTGTTTG miRNA* TGACTGAGACGACGACGACGA mismatches: 4 bulges: 2 |
pre-miRNA
CGATTGTCGCCAGTGTCCAGTGTCGTTTGTTTTGTTTGTTTGTTTTTTTCTGTGTGTTCGTGTCGTGATTGTGTGAGACCCCGTGAGAGCCGAGACGAAA
CGCCTCTCGCCGTTCTTCTTCTTCTTCTTCTGCACGCCCCCGAAATGGCATTGAAAATTGCCTGACTGAGACGACGACGACGACGGGAAACGGAGAGAAG
A
dot-bracket secondary structure
......((.((.((.(((..((((((((((((((.(((...((..(((((...((((.(((.(((.....((((((((......(((((..((((.(((.
.((.....))..))).)))).)))))..))).)))))...))).))))))).)))))..)).))).)))))))..)))))))...))).))))...))..
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGATTGTCGCCAGTGTCCAGTGTCGTTTGTTTTGTTTGTTTGTTTTTTTCTGTGTGTTCGTGTCGTGATTGTGTGAGACCCCGTGAGAGCCGAGACGAAA
CGCCTCTCGCCGTTCTTCTTCTTCTTCTTCTGCACGCCCCCGAAATGGCATTGAAAATTGCCTGACTGAGACGACGACGACGACGGGAAACGGAGAGAAG
A
dot-bracket secondary structure
......((.((.((.(((..((((((((((((((.(((...((..(((((...((((.(((.(((.....((((((((......(((((..((((.(((.
.((.....))..))).)))).)))))..))).)))))...))).))))))).)))))..)).))).)))))))..)))))))...))).))))...))..
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
