miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Danio rerio, Ciona intestinalis, Rattus norvegicus, Xenopus laevis, Oryzias latipes, Gallus gallus, Salmo salar, Canis lupus familiaris, Ictalurus punctatus, Ovis aries, Branchiostoma floridae, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Paracentrotus lividus, Ictalurus furcatus, Homo sapiens, Saccoglossus kowalevskii, Strongylocentrotus purpuratus, Petromyzon marinus, Oreochromis niloticus, Molgula tectiformis, Taeniopygia guttata, Ciona savignyi, Peromyscus maniculatus bairdii, Fundulus heteroclitus, Sparus aurata, Halocynthia roretzi, Patiria pectinifera, Dicentrarchus labrax, Pongo abelii, Ursus americanus, Equus caballus, Dissostichus mawsoni, Osmerus mordax, Oryctolagus cuniculus, Macaca nemestrina, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Squalus acanthias, Leucoraja erinacea, Rana catesbeiana, Takifugu rubripes, Cynops pyrrhogaster, Eptatretus burgeri, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Rutilus rutilus, Meleagris gallopavo, Lonchura striata domestica, Poecilia reticulata, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Oncorhynchus tshawytscha, Capra hircus, Paralichthys olivaceus, Psetta maxima, Pan troglodytes verus, Spadella cephaloptera, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Torpedo californica, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST008609
species: Strongylocentrotus purpuratus
miRNA family: miR-2444
source: miRNEST

Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTTATTGTTTTTTGTTTTT

miRNA*
 GAGCGGGGAAAGGACGACT

mismatches: 4
bulges: 2
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pre-miRNA
 GGCGCGACGGAGCACACAGACAACGAGGGGGAGAAGAGCGACGAGCGGGGAAAGGACGACTTGGGAAACACAAACCAAGGCAGCAAAGCCGGGGCCAACG
TTTTTATTGTTTTTTGTTTTTTGCGCTTTGTTTTTGATGTTGTTTGGTTTTTGTTTGTTT

dot-bracket secondary structure
.....(((((((.((.(((((((((.(((((.((((.((((.((((((((((..((.(((((((..........((..(((......))).)).)))).)
)).))....)))))))))).)))).)))).)))))..)))))))))))))))))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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