miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008646
species: Brassica oleracea
miRNA family: MIR1885
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCAATGAAAGGTATGATTCC

miRNA*
 AATCACACTTTCATTGATAAT

mismatches: 3
bulges: 1
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pre-miRNA
 NAAAATCTTCTTCTGTATTTTCTTCTNNNGACTTCCTTCTTCTTTGTCNNNAACTGTCTCCATCCTGTCTTCACGAGCTTCCTCTAGAAGATGTGCGCAG
AGTCTTTCTAAGTCACACTCATAAAGAGTTCAAAGAAAAGGAATCACACTTTCATTGATAATGAAATCAATAGAGAATGCTACTGAGCTCCTACAGGCGA
TTAGAAAATCTAATATGGCGATAGTCTTGCTCTCTATGAAGTGTCTATGAGAACAAGATTATCGCGATCTTAGATCCTCTAATTGCTTGTAAGAGCTGAT
CACCAATGGATCATTCGCTATTGATCTCTTCATCAATGAAAGGTATGATTCCCTTTCTTTGAAATTCCTTTTGAATGTGACTGAGAAAGCTTCTATGTAC
ATCTTCTCCGCGGAAGCTCATGAAAACAAGGTAGAACCAATTGTGGACAAAGAAGGAAGACATGAAAAAGATAGAGAAGAAGATCAACTT

dot-bracket secondary structure
....((((((((((.((((((.(((......((((((((((...((((...((.((..((.(((.(((.((((.((((((((...((((((((((((.((
((.((((((.(((((((.(((.((.(((((((((((((.(((((((..(((((((((((...((.((((((((.((((((((.(((((((.(((((((((
(((((..((((((.((.((((((((((((.((((...((....))...)))).)))))))))))).)).))))))..)))))))))))))).)))))...
...)).)))..))))).)))))))).))...)))))))))))...))))))).)))))))).))))).)).))).))))))).)))))).)))).)))))
)))))))....)))))))).)))).))).))).))..)).))..).)))))))))))))....))).)))))).))))))))))......


SIMILARITIES
miRBase bra-MIR1885: 1e-68

PMRD bra-miR1885: 1e-68

microPC no hits		UniProt sp|O82500|Y4117_ARATH: 0.0000000000003

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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