miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST000865
species: Helianthus paradoxus
miRNA family: MIRf582
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCTGCTGTTGTTGCAGTAGGA

miRNA*
TTCTTGGACGACATTACTG

mismatches: 2
bulges: 2

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pre-miRNA
TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGACGACATTACTGGGTTTGAA

dot-bracket secondary structure
.....(.(((((.((.(((((((.(((.((((.......)))).)))))))))).)))))))..)...

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt sp|Q8GYC7|PGL1B_ARATH: 0.0002

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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