ABOUT THIS RECORDspecies: Helianthus paradoxus
miRNA family: MIRf582
source: miRNEST
Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGTTGTTGCAGTAGGA miRNA* TTCTTGGACGACATTACTG mismatches: 2 bulges: 2 |
pre-miRNA
TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGACGACATTACTGGGTTTGAA
dot-bracket secondary structure
.....(.(((((.((.(((((((.(((.((((.......)))).)))))))))).)))))))..)...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGACGACATTACTGGGTTTGAA
dot-bracket secondary structure
.....(.(((((.((.(((((((.(((.((((.......)))).)))))))))).)))))))..)...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8GYC7|PGL1B_ARATH: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
