miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica oleracea var. alboglabra, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008651
species: Brassica oleracea
miRNA family: MIR529
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAAGAAAGAGAGCACAGTAG

miRNA*
 GAGGTTTTCTATCTTCTAA

mismatches: 3
bulges: 2
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pre-miRNA
 GGAGATCATGCGTTTGGTAACCACACTATGAAGAAGAAAGAGAGCACAGTAGGTGAAGAGTACAGCTTGTTTGCGGAAAGCAGCAGCTTGAGGTTTTCTA
TCTTCTAAAAAGCTTTTTATACAGTTTACTGGACAA

dot-bracket secondary structure
.....(((((.((.(((...))).)))))))((((((.(((((((....(((((...((((...))))..((((.....))))..)))))..))))))).
))))))...............(((....))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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