miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008654
species: Brassica oleracea
miRNA family: MIRf118
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGACCCGGATACGGATCCGA

miRNA*
GGGCTGGGATCCGGGTATGGG

mismatches: 2
bulges: 2

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pre-miRNA
GACCAAACACCCGGACCCGGATACGGATCCGATCCGGATGCTGTACGGGTTACCGATCGGAGACCAAGACGTGAAAGGTATGGAGATGGGTGGTGGTGGG
AGTTTTAGCTCGCTTTTGGCGTCGAATATGCAGTTGGGTCTTGGTGGGATCATCCTAGACGGGTCGGGCTGGGATCCGGGTATGGGACTAAAGA


dot-bracket secondary structure
.........((((.((((((((.(((.(((((((((....(((..(((....)))..)))..((((((((.(((...(((((..((((..(((.((((((
........)))))).))).))))...)))))..))).))))))))((((...))))...))))))))))))..)))))))).))))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q94AR6|DOF31_ARATH: 0.00000000008

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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