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Species belonging to selected taxon:

Brassica oleracea var. alboglabra, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008659
species: Brassica oleracea
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 CTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTAGCTCTATCTACTCATGTTGGATCCTCTTCGATCTAATCGAATCAAACCTCTATGTTTGAGAT
CTGATTAGGGTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAT

dot-bracket secondary structure
.....(((.((((((((..((((((.((((.(((.......(((...((((..((((((((...((((((...))))))((((((......)))))))))
)))))..))))..))).))).)))).))))))..)))))))).)))....


SIMILARITIES
miRBase aly-MIR166a: 2e-40

PMRD bna-miR166a: 3e-33

microPC miR166: 4e-63		UniProt no hits

RFAM mir-166: 1e-26		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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