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Species belonging to selected taxon:
Brassica oleracea var. alboglabra
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST008661
species:
Brassica oleracea
miRNA family:
MIR168
source:
miRNEST
Taxonomy by NCBI:
Brassica oleracea
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAC
miRNA*
TCCCGCCTTGCATCAATTGAAT
mismatches:
2
bulges:
1
View larger
pre-miRNA
TACAGAGATAGAATCACCGTGGGGCTCGGAT
TCGCTTGGTGCAGGTCGGGAC
TGATATGCTGACACAACCACTGGTGCTTTTGCCTTATTGGTTTGTGAG
CAGGTATTGGC
TCCCGCCTTGCATCAATTGAAT
CGGAGCCTCCAATGGTGAAACGAATCCA
dot-bracket secondary structure
.............((((((((((((((.(((
(((.((((((((((.((((((
(((((((((.(((.(((((.(((.((....)).))).)))))))).))
))..)))))).
))))).)))))))))).)))))
).)))))))..)))))))..........
SIMILARITIES
miRBase
ath-MIR168a
:
1e-16
PMRD
ath-miRf10239-akr
:
1e-16
microPC
miR168
:
6e-19
UniProt
no hits
RFAM
MIR168: 1e-29
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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