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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008663
species: Brassica oleracea
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TATTGGTACGGTTGAATCGAA

mismatches: 1
bulges: 0
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pre-miRNA
 AACTTCTAAGTAGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACTATT
ACGACAA

dot-bracket secondary structure
........(((((.(((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))).)))))
.......


SIMILARITIES
miRBase ptc-MIR171i: 0.00000002

PMRD ptc-miR171i: 0.00000002

microPC miR171: 1e-43		UniProt no hits

RFAM MIR171_1: 0.0000004		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045484)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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