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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST008666
species:
Brassica oleracea
miRNA family:
MIR162
source:
miRNEST
Taxonomy by NCBI:
Brassica oleracea
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG
miRNA*
GGAGGCAGCGGTTGATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AAAAAAAAAGAGTTTGTTAGAGAATAAGGAGCGAAAGATGCT
GGAGGCAGCGGTTGATCGATC
TCTTTGTGGGAAATTTTGGAAAAAAAAACTCAAAGCA
TGAACAGA
TCGATAAACCTCTGCATCCAG
CGGTCGCCACTTTATCACTCGTACTTTTAATCCGTTTTA
dot-bracket secondary structure
.......((((((......(((.((((((.((((....((((
(((.((((.((((.(((((((
(.((((((.((..((((....))))....))....))
)))).)))
))))).)))).)))).)))))
)).))))..))))))..)))..))))))...........
SIMILARITIES
miRBase
aly-MIR162a
:
0.0000000000006
PMRD
ath-miR162a
:
0.000000000009
microPC
miR162
:
0.0000000001
UniProt
no hits
RFAM
MIR162_2: 1e-17
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record