miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000867
species: Helianthus paradoxus
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGCTCGAGA

miRNA*
TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0

View larger
pre-miRNA
TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATGATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTCTAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT


dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((.......((((((((..(((.((((((.........))))))(((((((((....)))))
)))).)))))))))))....)))))))...)))).))))))..)))))))).)).....



SIMILARITIES
miRBase ctr-MIR166: 0.000000008

PMRD aqc-miR166e: 0.000000008

microPC miR166: 1e-69
UniProt no hits

RFAM mir-166: 0.0000006
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;