ABOUT THIS RECORDspecies: Helianthus paradoxus
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGA miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 5 bulges: 0 |
pre-miRNA
TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATGATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTCTAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT
dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((.......((((((((..(((.((((((.........))))))(((((((((....)))))
)))).)))))))))))....)))))))...)))).))))))..)))))))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATGATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTCTAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT
dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((.......((((((((..(((.((((((.........))))))(((((((((....)))))
)))).)))))))))))....)))))))...)))).))))))..)))))))).)).....
SIMILARITIES| miRBase ctr-MIR166: 0.000000008 PMRD aqc-miR166e: 0.000000008 microPC miR166: 1e-69 | UniProt no hits RFAM mir-166: 0.0000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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