miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000867
species: Helianthus paradoxus
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGAGA

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0
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pre-miRNA
 TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATGATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTCTAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT

dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((.......((((((((..(((.((((((.........))))))(((((((((....)))))
)))).)))))))))))....)))))))...)))).))))))..)))))))).)).....


SIMILARITIES
miRBase ctr-MIR166: 0.000000008

PMRD aqc-miR166e: 0.000000008

microPC miR166: 1e-69		UniProt no hits

RFAM mir-166: 0.0000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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