miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST000867
species: Helianthus paradoxus
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGAGA

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0
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pre-miRNA
 TTCTTTTGTGGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATGATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGA
TCAATGATTAAAGATTCTAATCTTGTGTTGTCGGACCAGGCTTCATTCCCCTCATGTGT

dot-bracket secondary structure
......((.((((((((..((((((.((((...(((((((.......((((((((..(((.((((((.........))))))(((((((((....)))))
)))).)))))))))))....)))))))...)))).))))))..)))))))).)).....


SIMILARITIES
miRBase ctr-MIR166: 0.000000008

PMRD aqc-miR166e: 0.000000008

microPC miR166: 1e-69		UniProt no hits

RFAM mir-166: 0.0000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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