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Species belonging to selected taxon:
Brassica oleracea var. alboglabra
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST008678
species:
Brassica oleracea
miRNA family:
MIR1533
source:
miRNEST
Taxonomy by NCBI:
Brassica oleracea
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATAATAATAATAATAATGATA
miRNA*
TTATTATTATTATTATTATTA
mismatches:
0
bulges:
0
View larger
pre-miRNA
CCAAGGAGAGATTTCCTCGGAGGTAAAAT
TTATTATTATTATTATTATTA
TTATCGTAGTTTTAATTTGATGAATATCCATTTTTTGTGATTCATAAAAT
ACGATAAAATTTTGGATGAAGAAAGGAAATCGTTGGAACTTCCTTTTCCTTAAGGGAAAGAATCTGAATCGAAATTTCCAGATTCTTGTGTGATCGTGTG
TATATAATAATA
ATAATAATAATAATAATGATA
AATTAGATACGAGGAGGTACAATGTTCAA
dot-bracket secondary structure
.....(((..(((((((((...((..(((
(((((((((((((((((((((
((((.((.((..((...((((...((((((.((((..(((((.....)))
.))..))))...))))))...(((((((...........)))))))((((...))))(((((((((............))))))))).....))))..))
...)).)).)))
)))))))))))))))))))))
))))..)).)))))))))......)))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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