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Species belonging to selected taxon:

Oreochromis niloticus, Paralabidochromis chilotes



ABOUT THIS RECORD

ID: MNEST008719
species: Oreochromis niloticus
miRNA family: miR-1346
source: miRNEST

Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCGGTTGGGGGCGGGGGGGC

miRNA*
CCCCCCGCCCGCCCGCCAGCTCG

mismatches: 1
bulges: 2

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pre-miRNA
GGTAAAAAATCCATCATGTTGTCCCCCCGCCCGCCCGCCAGCTCGTCTGAAGAAGAGGCGGTTGGGGGCGGGGGGGCTGGATCAGCTGTTACTGCT

dot-bracket secondary structure
(((((...(((((.......((((((((((((.((.(((.(((..(((.....))))))))).)))))))))))))))))))......)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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