miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000873
species: Helianthus paradoxus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTTCA

miRNA*
 AACATGAAGATGAGGTGTTT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 ACGGTTCATCATCATCATCATCATCATCTTCAATAACCATAGTCTCTTTAACAGAACACGAAGAGTTGGAAGAACACGACTTAGGTATTGAAACCGCTCG
TTTCTTGATAGTTTCTCGCTCTGCCCGTTCAAGTGCAGACTTAACTTTATCTAGAGTGCACACACTTTTGTAAGCCGGTGGTGAGGATGATACGTTCACG
AGGTTAAGATCTAGACTCGTGTCGTCGAACAGATTCAAGGGCTTTTTCGACATTGGTGGGAAGTTAAGGTCCTGAAGCTTTGAAACCGTTTGGTCGAAGC
GGTTTTGTTTGTGATCTGAACATGAAGATGAGGTGTTTGGTGATTT

dot-bracket secondary structure
.....((((((.((((.(((((.((((.(((.....(((....((((((..........)))))).))).(((.(((((.........((((((((((((
...((.(((.(((((..((.......))..((((.(((.(((((((((..((((((((....)))))(((.(((((.....((((..((..(((..((((
((.(((.....))).)))))).)))....))..))))..)))))...)))...)))...)))))))))...)))..)))).))))).))).)).)).)))
))))))).))))).)))))).)))).)))))))))..))))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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