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Species belonging to selected taxon:

Oreochromis niloticus, Paralabidochromis chilotes



ABOUT THIS RECORD

ID: MNEST008735
species: Oreochromis niloticus
miRNA family: mir-147
source: miRNEST

Taxonomy by NCBI:
Oreochromis niloticus Oreochromis Tilapiini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGTGCGGAAATGCTTCTGC

miRNA*
AGAATCGTTTCTGCACAAACTA

mismatches: 2
bulges: 2

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pre-miRNA
CCCCACCCCCCCATTAGTCTAACAGAATCGTTTCTGCACAAACTAGGACACTTTGACACTCAGTGTGCGGAAATGCTTCTGCTCAACTGGTGGGGTTCAC
CC


dot-bracket secondary structure
........((((((((((....(((((.(((((((((((..(((.((...........)).)))))))))))))).)))))....)))))))))).....
..



SIMILARITIES
miRBase gga-mir-147-1: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-147: 3e-32
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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