ABOUT THIS RECORDspecies: Helobdella robusta
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Helobdella robusta Helobdella Glossiphoniidae Rhynchobdellida Hirudinea Hirudinida Clitellata Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGCTGCTGCTGATGAGGAT miRNA* AACAGCTCCAGTGACAGCATCAT mismatches: 3 bulges: 2 |
pre-miRNA
TACGTGACGAAGTGTTGGTGATGTTGAATGCTATCAGTCGAGATGCTGCTGCTGATGAGGATGACGATGAGGAGGATGCTGAAGACGAGGAAGAGGCGGA
AGGTATCTTCGTTGACGTTAAAACAGCTCCAGTGACAGCATCATGGAGGTAGATCAAATGATGATGAGGACGTGATGATTGG
dot-bracket secondary structure
..(((.(((...(((((......((((...(((((..(((.(((((((.(((((..(((..(((((.(((.(((((((((.....((.........))..
.))))))))).))).)))))......)))))))).))))))).))).))))).))))....)))))....))).))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACGTGACGAAGTGTTGGTGATGTTGAATGCTATCAGTCGAGATGCTGCTGCTGATGAGGATGACGATGAGGAGGATGCTGAAGACGAGGAAGAGGCGGA
AGGTATCTTCGTTGACGTTAAAACAGCTCCAGTGACAGCATCATGGAGGTAGATCAAATGATGATGAGGACGTGATGATTGG
dot-bracket secondary structure
..(((.(((...(((((......((((...(((((..(((.(((((((.(((((..(((..(((((.(((.(((((((((.....((.........))..
.))))))))).))).)))))......)))))))).))))))).))).))))).))))....)))))....))).))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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