ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf1170
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCTCTGTTTCAGGTGGCCG miRNA* CTGCTGGAGGCTGAATGGAA mismatches: 5 bulges: 0 |
pre-miRNA
TGTTTCCCCTTCTTCTCTGTTTCAGGTGGCCGGCGCTATGACCAAGGAGCTGCTGGCGACTGTGTTTCTGTCGCGTCTGTGCTGCTGCTGGAGGCTGAAT
GGAAGGGAGACA
dot-bracket secondary structure
((((((((.((((..((.(((((.((((((.(((((...(((...((.....)).(((((.........)))))))).))))))))))).))))).))..
))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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TGTTTCCCCTTCTTCTCTGTTTCAGGTGGCCGGCGCTATGACCAAGGAGCTGCTGGCGACTGTGTTTCTGTCGCGTCTGTGCTGCTGCTGGAGGCTGAAT
GGAAGGGAGACA
dot-bracket secondary structure
((((((((.((((..((.(((((.((((((.(((((...(((...((.....)).(((((.........)))))))).))))))))))).))))).))..
))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11672-akr: 0.0000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
