ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf877
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGATTATGCTGCTGTGGTGG miRNA* ACTACTATAGCTTAATTTCTT mismatches: 4 bulges: 0 |
pre-miRNA
AATAGGTAGATTACTACTATAGCTTAATTTCTTACTGATCATGATTACTTGCACCAGTAGTACTCTCTGGTGGTGCTTGTGCTGGCATCAGGGAAGCAGG
ATTATGCTGCTGTGGTGGTCTCTTTCT
dot-bracket secondary structure
...(((.((((((((((..((((.(((((((((.(((((..((..(((..((((((.(((......))).))))))..))).))..)))))..)))..))
)))).))))..))))))))))...)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATAGGTAGATTACTACTATAGCTTAATTTCTTACTGATCATGATTACTTGCACCAGTAGTACTCTCTGGTGGTGCTTGTGCTGGCATCAGGGAAGCAGG
ATTATGCTGCTGTGGTGGTCTCTTTCT
dot-bracket secondary structure
...(((.((((((((((..((((.(((((((((.(((((..((..(((..((((((.(((......))).))))))..))).))..)))))..)))..))
)))).))))..))))))))))...)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10528-akr: 3e-29 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
