ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1030
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGCACCTGCACCTGCACCT miRNA* GTGCAGGTGCAAATGCAGATA mismatches: 3 bulges: 0 |
pre-miRNA
TAAAACACCAACATGGCATTCACCTGCACCTGCACCTGCACCTCAAGCTTGTTTTAATGTTTCAAACTTACTTTTGGTTTTGGAGTCAAAAACAAAAGAAA
GAAACAAGTAAGGTGCAGGTGCAAATGCAGATAAAGGCAACATGTTGGCAT
dot-bracket secondary structure
)......((((((((((......(((((..(((((((((((((...((((((((............(((.((((((.(((((....))))).)))))).))
))))))))).)))))))))))))..)))))......))..))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TAAAACACCAACATGGCATTCACCTGCACCTGCACCTGCACCTCAAGCTTGTTTTAATGTTTCAAACTTACTTTTGGTTTTGGAGTCAAAAACAAAAGAAA
GAAACAAGTAAGGTGCAGGTGCAAATGCAGATAAAGGCAACATGTTGGCAT
dot-bracket secondary structure
)......((((((((((......(((((..(((((((((((((...((((((((............(((.((((((.(((((....))))).)))))).))
))))))))).)))))))))))))..)))))......))..))))))))...
SIMILARITIES| miRBase ptc-MIR530a: 5.0E-78 PMRD ptc-miR530a: 5.0E-78 microPC miR1030: 4.0E-57 | UniProt no hits RFAM 0MIR530: 8.0E-77 | most similar mature miRNAs |
Identical with: ptc-miRf10082-akr from PMRD (MNEST051904), ptc-miRf11025-akr from PMRD , miR1030 from microPC , ptc-MIR530a from miRBase , ptc-miRf11026-akr from PMRD , ptc-miR530a from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
