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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST008836
species: Populus trichocarpa
miRNA family: MIR1030
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTGCACCTGCACCTGCACCT

miRNA*
 GTGCAGGTGCAAATGCAGATA

mismatches: 3
bulges: 0
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pre-miRNA
 AAAACACCAACATGGCATTCACCTGCACCTGCACCTGCACCTCAAGCTTGTTTTAATGTTTCAAACTTACTTTTGGTTTTGGAGTCAAAAACAAAAGAAA
GAAACAAGTAAGGTGCAGGTGCAAATGCAGATAAAGGCAACATGTTGGCAT

dot-bracket secondary structure
......((((((((((......(((((..(((((((((((((...((((((((............(((.((((((.(((((....))))).)))))).))
))))))))).)))))))))))))..)))))......))..))))))))...


SIMILARITIES
miRBase ptc-MIR530a: 5e-78

PMRD ptc-miR530a: 5e-78

microPC miR1030: 4e-57		UniProt no hits

RFAM MIR530: 8e-77		most similar mature miRNAs

Identical with: ptc-miRf10082-akr from PMRD (MNEST051904)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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