ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAA
TTATAAAAAGAAAAAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGAC
dot-bracket secondary structure
.......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..))))).
......)))......))))))).))))).)))))))))).))))).)))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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TTTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAA
TTATAAAAAGAAAAAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGAC
dot-bracket secondary structure
.......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..))))).
......)))......))))))).))))).)))))))))).))))).)))))))))))))).......
SIMILARITIES| miRBase ptc-MIR168b: 8e-71 PMRD ptc-miR168b: 8e-71 microPC miR168: 4e-60 | UniProt no hits RFAM MIR168: 6e-81 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
