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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST008846
species: Populus trichocarpa
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
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pre-miRNA
 ATTTACTTACCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAAA
AGAAAAGGAAGGAAACAGGAAAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCAGA

dot-bracket secondary structure
......((((((.((((((((((((((.((((((((((.(((((.((((((((.(.((((....((((((((......)))..)))))..((((......
..........................)))).)))).))))))))).))))).)))))))))).))))))))))))))))))))......


SIMILARITIES
miRBase ptc-MIR168a: 9e-40

PMRD ptc-miR168a: 9e-40

microPC miR168: 9e-34		UniProt no hits

RFAM MIR168: 3e-43		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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