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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008857
species: Populus trichocarpa
miRNA family: MIR1444
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCACATTCGGTCAACGTTC

miRNA*
 ATATTGATCGAATATGTATG

mismatches: 3
bulges: 0
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pre-miRNA
 ATATTTCCTTGTTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCACATTCGGTCAACGTTCGAGTGATAAACAGA
AATAAT

dot-bracket secondary structure
.((((((..((((((((.(((((((.((((((((((.((.((((((((((.......)))))))))).)).)))))))))).))))))).))))))))))
))))..


SIMILARITIES
miRBase ptc-MIR1444b: 5e-43

PMRD ptc-miR1444b: 5e-43

microPC miR1444: 4e-31		UniProt no hits

RFAM MIR1444: 9e-42		most similar mature miRNAs

Identical with: miR1444 from microPC (MNEST046835)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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