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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST008861
species: Populus trichocarpa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCATCTTA

miRNA*
 AGGTGCAGGTGCAAGTGCAGG

mismatches: 0
bulges: 0
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pre-miRNA
 TTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGGTTTGGTATTGAATCCAAAAAACAAATCCAAGTTCCGTGCCGATCCAGAATGTGGGACA
ATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCC

dot-bracket secondary structure
..((.((((((((((((((((((((((((((((((.(((((.(((((........)))))...))))).))).(((((((....((((.....))))...
......)))))))(((((.....)))))))))))))))))))))))))))))))).)).


SIMILARITIES
miRBase ptc-MIR530b: 5e-47

PMRD ptc-miR530b: 5e-47

microPC miR530: 2e-74		UniProt no hits

RFAM MIR530: 1e-45		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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