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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST008868
species: Populus trichocarpa
miRNA family: MIRf203
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGGTGCAGGTGCAAGTGC

miRNA*
 ATTTGCACCTGCATCTTATTG

mismatches: 1
bulges: 0
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pre-miRNA
 TATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGGTTGTATTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATAC
AGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTT

dot-bracket secondary structure
...(((((((((.(((..((.(((((((((((((((((((((((((((..((..(((((((....(((..((((((.((...(((..........)))..
.)).)))))).)))...)))))))..........)).....))))))))))))))))))))))))))).))))).))))).))))...


SIMILARITIES
miRBase ptc-MIR530b: 1e-85

PMRD ptc-miR530b: 1e-85

microPC miR530: 2e-53		UniProt no hits

RFAM MIR530: 2e-84		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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