miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008870
species: Populus trichocarpa
miRNA family: MIRf1017
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTATCTGCATTTGCACCTG

miRNA*
 GGTGCAAGTGCAGGTGAATGC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGGTTGTATTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATA
CAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTC

dot-bracket secondary structure
....(((((((((.(((..((.(((((((((((((((((((((((((((..((..(((((((....(((..((((((.((...(((..........))).
..)).)))))).)))...)))))))..........)).....))))))))))))))))))))))))))).))))).))))).))))....


SIMILARITIES
miRBase ptc-MIR530b: 1e-85

PMRD ptc-miR530b: 1e-85

microPC miR530: 2e-53		UniProt no hits

RFAM MIR530: 2e-84		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;