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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008872
species: Populus trichocarpa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCATCTTA

miRNA*
 AGGTGCAGGTGCAAGTGCAGG

mismatches: 0
bulges: 0
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pre-miRNA
 ATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATAC
AGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTC

dot-bracket secondary structure
.....(((((((((((((..((.((((((((((((((((((((((((((.(((((((((((.((.(((..((((((.((...(((..........)))..
.)).)))))).))).)).......)))))))))..)).....))))))))))))))))))))))))))..))))))))))).))))....


SIMILARITIES
miRBase ptc-MIR530b: 2e-71

PMRD ptc-miR530b: 2e-71

microPC miR530: 9e-40		UniProt no hits

RFAM MIR530: 4e-70		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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